There are maybe three different stages to be distinguished and to be understood here:
first: maybe part of the question is why an $n$-dimensional QFT should assign numbers to closed $n$-dimensional manifolds, and vector spaces to closed $(n-1)$-dimensional manifolds. That is what I had replied to in that other discussion linked to above: the vector spaces assigned are just the spaces of quantum states assigned to a spatial hyperslice of spacetime, the numbers assigned to closed $n$-dimensional pieces of spacetimes are the partition functions, and generally the linear maps assigned to $n$-dimensional pieces of spacetime with boundary are the quantum propagators (the correlators, the S-matrix) which propagate the incoming states to the outgoing states.
second: the question is why one would want to refine this assignment ("Atiyah-Segal-type QFT") to something that also assigns data to $(n-k)$-dimensional pieces of spacetime, for all $0 \leq k \leq n$. The answer to this is that this solves what in physics is known as the "problem of covariant quantization". Namely assigning vector spaces of states to spatial hyperslices a priori means breaking the diffeomorphism invariance of the field theory, after all it involves choosing these spatial hyperslices and assigning data to them in a way that is not a prior build up covariantly.
The whole point of "extended TQFT" is to solve this "problem of covariant quantization of field theory" by enforcing that the spaces of quantum states which are assigned to codimeninson-1 spatial hyperslices arise from gluing of local data. It's the locality principle of quantum field theory, by which every global assignment must be reconstructible from gluing of local assignments.
Mathematically this is where higher categories come in: where the ordinary category of vector spaces knows about vector spaces and linear maps between them, hence about the data of spaces of quantum states and of propagators between them, an n-categorical refinement of this would also know how to build spaces of quantum states (which are then promoted from objects to $(n-1)$-morphisms) from local data (namely by composing $(n-1)$-morphisms along $(n-2)$-morphisms).
So in summary: the reason for passing from Atiyah-Segal style QFT which formalizes the assignment of spaces of quantum states to spatial hypersurfaces and of linear quantum propagator maps between them to pieces of spacetime to higher categorical extended QFT is to fully implement the locality principle of quantum field theory in the axioms.
The high-point of this axiomaticts is the cobordism theorem which fully clasifies all fully local ("extended") TQFTs in a rigorous fashion.
third: the question then finally is: if an $n$-dimensional fully local (topological) quantum field theory hence is an n-functor $Bord_n \to \mathcal{C}$ from the n-category of cobordisms to some n-category $\mathcal{C}$ which in its two top dimension degrees looks like vector spaces with linear maps between them, then: what should $\mathcal{C}$ be like in lower degrees?
This is actually a question of ongoing investigation. The cobordism theorem itself allows any n-category wth all duals, but many of these will not "look very physical" in fact.
In any case, the point to notice here is that $\mathcal{C}$ is a choice. It may -- but need not -- look like suggested above in the question. This is what it tends to look like for 3d TQFT of Chern-Simons theory type. The strongest theorem to that effect is now probably Douglas & Schommer-Pries & Snyder 13. See there for more.
This post imported from StackExchange Physics at 2014-06-04 11:35 (UCT), posted by SE-user Urs Schreiber